Picprog2006 configuration bits

Hello,
I use picprog2006 to program my pic18f2550 and MPLAb C18 to edit and compile my source code. The configuration bit options of picprog2006 are not the same than those of MPLAB. In picprog2006 there is less option than in mplab. I would like to know if it’s possible to program my pic via 8076 directly with mplab and what programmer I must choose then:
Picstart plus,
MPLAB ICD2,
AN851 Quick programmer beta ,
MPLAB PM3
PRO MATE II

Thank you

What configuration bits are you talking about?